Homework 9: Fill in the blank – 3 points each – capitalization does not matter. Students can take this assignment an unlimited number of times with the best score kept.
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1. Question
Acquire the following protein sequences from NCBI Protein: WP_063124062.1, QLH94941.1, Q58077.1, and WP_135122245.1. Be sure to note the organism each protein is from. Analyze each protein using CDD and InterPro.
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For WP_063124062.1 analyzed by CDD, what is the E-value for the PRK10877 domain identified?
For WP_063124062.1 analyzed by InterPro, what is the identifier (i.e., PF######) for the Thioredoxin-like domain from the Pfam database?
For WP_063124062.1 analyzed by InterPro, what is the conserved site identified? Do NOT include the PS#### identifier.
For QLH94941.1 analyzed by CDD, what is the name of the interval identified between amino acids 49-135?
For QLH94941.1 analyzed by InterPro, what is the identifier (i.e., PF######) for the identified domain from the Prosite profiles database?
For Q58077.1 analyzed by CDD, what is the name of the domain identified?
For Q58077.1 analyzed by InterPro, what are the InterPro GO terms identified under Biological Process?
For WP_135122245.1 analyzed by CDD, how many domains were identified?
For WP_135122245.1 analyzed by InterPro, how many domains were identified?
For WP_135122245.1 analyzed by InterPro, what is the longest prediction made?
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